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Glossary of terms used on this site

ISB Glossary

Search for glossary terms (regular expression allowed)

Glossaries

Term Main definition
'S_typhimurium.gbk'

A sample data of prokaryotic genome sequnece.

Hits - 304
Synonyms - S.typhimurium.gbk
A.A.

Abbreviation of 'Amino Acid'.

Hits - 522
A.A. Mapping

Function to map amino acid sequence by using homology on the reference genome base sequence. The mapping result can be viewed with ChartViewer.

Hits - 288
Synonyms - Amino Acid Mapping Amino Acid Sequence Mapping
A.A. Profile

A continuous bar graph showing the properties of amino acids of proteins.

Hits - 572
Synonyms - Amino Acid Profile
ACE

 The output file format of Phrap assembler. This file can be generated or imported by the Genome Traveler.File extension is *.ace.

Hits - 343
Activation

Making a license effective

Hits - 308
Add

Add Operation button. It is also called an add button.

Hits - 970
Synonyms - Add Button
AFG

de novo Assembly result file format by Velvet assembler. Can be imported with GenomeTraveler.

Hits - 328
Annotation

Annotate features on base sequences and amino acid sequences.

Hits - 883
Annotation Window

A viewer window which provides various annotation tools.

Hits - 732
Synonyms - Annotation Viewer annotation window annotation viewer
Apply

Operation button to apply settings in dialog etc.

Hits - 388
AUGUSTUS

Eukaryotic gene prediction software developed at the University of Göttingen in Germany.

Hits - 597
Auto Annotation

Automatic annotation function. Implemented on IMCGE or higher edition of IMC.

Hits - 561
Auto Copy

Ability to automatically post necessary annotations from hit subjects as a result of homology search. You can specify the Qualifier to copy automatically. Implemented in IMC.

Hits - 329
Synonyms - Copy Qualifier
BAM

A binary format containing read information mapped to a genome sequence. Format output from SAMTool. Read in GenomeTraveler can display alignment.

Hits - 240
Synonyms - Binary Alignment Map